expanded_to_gurobi: Parse a long format metabolic model to a Gurobi model

In maxconway/fbar: An Extensible Approach to Flux Balance Analysis

Description

This function is deprecated. github.com/Fl0Sch/ROI.plugin.gurobi is recommended instead.

Usage

expanded_to_gurobi(reactions_expanded)

Arguments

reactions_expanded

A list of data frames as output by expand_reactions

Details

Used as the second half of reactiontbl_to_gurobi, this parses the long format produced by reactiontbl_to_expanded to a Gurobi model

For installation instructions for Gurobi, refer to the Gurobi website: https://www.gurobi.com/.

The reaction_table must have columns:

• abbreviation,

• equation,

• uppbnd,

• lowbnd, and

• obj_coef.

Value

A list suitable for input to Gurobi.

See Also

Other parsing_and_conversion: expanded_to_ROI(), expanded_to_glpk(), reactiontbl_to_expanded(), reactiontbl_to_gurobi()

maxconway/fbar documentation built on Sept. 8, 2020, 6:20 p.m.