Rerun the excyte pipeline on selected phenograph clusters
1 2 3 4 5 6 7 | rerun_excyte(
excyte_obj,
clusters_id = NA,
downsampling = 3000,
channels = "all",
k = 30
)
|
excyte_obj |
list of object obtained from an initial run with the excyte pipeline |
clusters_id |
vector of character containing the ID of the phenograph clusters to rerun the excyte pipeline on |
downsampling |
numeric indicating the number event to randomly select from each fcs, if the number of events request is bigger than the number of event in the fcs, all event are selected |
channels |
vector containing channels to select. Can be "all" to select all channels, "with_desc" to select channels with a marker description or a vector a channels. |
k |
numeric indicating the number of neighbor for phenograph and umap computation |
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