compute_umap: Compute Umap coordinates for each event

Description Usage Arguments

View source: R/run_excyte.R

Description

Compute Umap coordinates for each event

Usage

1
compute_umap(processed_fcs_obj, channels = c("all", "with_desc")[1], k = 30)

Arguments

processed_fcs_obj

list containing a datraframe of processed intensities for each event and informations of channel used

channels

vector containing channels to select. Can be "all" to select all channels, "with_desc" to select channels with a marker description or a vector a channels.

k

numeric indicating the number of neighbor for phenograph and umap computation


maxmeyl/excyte_1.0 documentation built on March 7, 2020, 2:01 a.m.