View source: R/runNormalizations.R
Check if the normalization function's name and the method's name to compute normalization/scaling factors are correctly matched.
checkNormalization(fun, method, ...)
a character with the name of normalization function (e.g. "norm_edgeR", "norm_DESeq2", "norm_CSS"...).
a character with the normalization method (e.g.
"TMM", "upperquartile"... if the
other arguments if needed (e.g. for
a list object containing the normalization method and its parameters.
# Check if TMM normalization belong to "norm_edgeR" check_TMM_normalization <- checkNormalization(fun = "norm_edgeR", method = "TMM")
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