plotFit: Network Fit Plot

In mccallm/ternarynet: Ternary Network Estimation

Network Fit Plot

Description

This function plots the graph corresponding to the minimum scoring network.

Usage

 plotFit(ternaryFit, type="interactive", ...)

Arguments

ternaryFit	a ternaryFit object
type	the type of plot to produce. "interactive" produces a plot that can be altered in the plotting window using the tkplot function from the igraph package. "static" produces a standard plot in any R graphics device.
...	additional parameters passed to the plotting function

Value

A plot of the network corresponding to the minimum score (stored in the graphObjMin slot) is plotted.

Author(s)

Matthew N. McCall and Anthony Almudevar

See Also

Almudevar A, McCall MN, McMurray H, Land H (2011). Fitting Boolean Networks from Steady State Perturbation Data, Statistical Applications in Genetics and Molecular Biology, 10(1): Article 47.

Examples

ssObj <- matrix(c(1,1,1,0,1,1,0,0,1),nrow=3)
pObj <- matrix(c(1,0,0,0,1,0,0,0,1),nrow=3)
tnfitObj <- tnetfit(ssObj, pObj)
plotFit(tnfitObj, type="static")

mccallm/ternarynet documentation built on Feb. 26, 2024, 3:51 a.m.