tnetpost: Ternary Network Posterior Sampling

Description Usage Arguments Value Author(s) See Also Examples

View source: R/tnetpost.R

Description

This function samples from the posterior density of a ternary network based on perturbation experiments.

Usage

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tnetpost(tfit, mdelta=as.integer(10000), msample=as.integer(2000), temperatureScale=1.0, xSeed=NA)

Arguments

tfit

a ternaryFit object

mdelta

number of transitions between samples

msample

number of samples

temperatureScale

the final temperature is multipled by this value for sampling

xSeed

an integer random seed. If NA, a random seed is generated.

Value

The function returns a ternaryPost object.

Author(s)

Matthew N. McCall and Anthony Almudevar

See Also

Almudevar A, McCall MN, McMurray H, Land H (2011). Fitting Boolean Networks from Steady State Perturbation Data, Statistical Applications in Genetics and Molecular Biology, 10(1): Article 47.

Examples

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ssObj <- matrix(c(1,1,1,0,1,1,0,0,1),nrow=3)
pObj <- matrix(c(1,0,0,0,1,0,0,0,1),nrow=3)
rownames(ssObj) <- rownames(pObj) <- colnames(ssObj) <- colnames(pObj) <- c("Gene1","Gene2","Gene3")
tnfitObj <- tnetfit(ssObj, pObj)
tnpostObj <- tnetpost(tnfitObj, mdelta=10, msample=10)

mccallm/ternarynet documentation built on June 20, 2021, 11:15 p.m.