pdf_ranges: Calculate the climate tolerance of the taxa from their pdfs.

In mchevalier2/crestr: A Probabilistic Approach to Reconstruct Past Climates Using Palaeoecological Datasets

Calculate the climate tolerance of the taxa from their pdfs.

Description

Calculate the climate tolerance of the taxa from their pdfs.

Usage

pdf_ranges(
  x,
  climate = x$parameters$climate,
  taxanames = x$input$taxa.name,
  uncertainties = x$parameters$uncertainties,
  orderby = NA
)

Arguments

x	A crestObj generated by either the crest.calibrate, crest.reconstruct or crest functions.
climate	Climate variables to be used to generate the plot. By default all the variables are included.
taxanames	A list of taxa to use for the plot (default is all the recorded taxa).
uncertainties	A (vector of) threshold value(s) indicating the error bars that should be calculated (default are the values stored in x).
orderby	A string ('name', or one of the climate variables) to sort the output table

Value

The set of coordinates ext projected in equal earth.

Examples

data(reconstr)
pdf_ranges(reconstr, climate='bio1')
pdf_ranges(reconstr, climate='bio12', orderby='bio1', uncertainties=c(0.2, 0.6, 0.95))

mchevalier2/crestr documentation built on Feb. 14, 2025, 6:31 p.m.