View source: R/readData.R View source: R/readData.R
readData | R Documentation |
Reads data
readData(infile, type = c("none", "trouvelot", "grid"))
infile |
the name of the file which the data are to be read from. |
type |
grid or trouvelot |
A grid dataset should have 7 variables:
It is mandatory that the dataset is formatted as follow
Sample names
Sample Replicates
Number of total fungal structures identified
Number of hypopodia identified
Number of interanl hyphae identified
Number of arbuscules identified
Number of vesicles identified
A Trouvelot dataset should have 3 variables:
It is mandatory that the dataset is formatted as follow
Sample names
Sample Replicates
Scoring value. The only possible terms in this column are: 0A0,1A3,2A3,3A3,4A3,5A3,1A2,2A2,3A2,4A2,5A2,1A1,2A1, 3A1,4A1,5A1,1A0,2A0,3A0,4A0,5A0. If 0 is present, it will be converted into 0A0
The order of the Samples (in the "Samples" column) is the order used for plot display. So, if you like to have a specific order, please sort the original data accordingly
This funtion reads trouvelot and grid data
an object of class grid
or trouvelot
.
Marco Chiapello <mc983@cam.ac.uk>
f <- dir(system.file("extdata", package = "Ramf"), full.names = TRUE, pattern = "grid.csv") x <- readData(f, type = "grid")
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