mcjmigdal/sumsamstats: Summarizing Samtools Stats Output With ATAC-seq QC in mind

The package provides samtools stats parser that allows to easly read stats report to R. It also provides several plotting functions for quick visualisation of libraries statistics. Can be used to create summaries and allow quick inspection of multiple samples. Available plots were done as so they allow to check some of the ENCODE ATAC-seq quality guidelines.

Getting started

Package details

MaintainerThe package maintainer <[email protected]>
LicenseCC0
Version1.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("mcjmigdal/sumsamstats")
mcjmigdal/sumsamstats documentation built on Nov. 20, 2018, 5:18 p.m.