plotInsertSize: Plot Insert Size Samtools Stat section

In mcjmigdal/sumsamstats: Summarizing Samtools Stats Output With ATAC-seq QC in mind

Description

plotInsertSize plots Insert Size (IS) part of output returned by readSamtoolsStats.

Usage

plotInsertSize(data, samples, log = FALSE, lims = c(0, 400),
  sizeLimit = 0)

Arguments

data	Insert Size (IS)) part of output returned by readSamtoolsStats or formated data frame of values to plot.
samples	vector of samples names from data that are required to be plotted.
log	logical value indicating if data should be log transformed before plotting.
lims	two element vector specifing x-axis limists.
sizeLimit	lower limit on insert size. Data below this limit will be filtered out.

Examples

IS <- readSamtoolsStats()
plotInsertSize <- function(data, samples, log = FALSE, lims = c(0, 400), sizeLimit = 75)

mcjmigdal/sumsamstats documentation built on July 11, 2021, 10:47 a.m.