promoters_f5: Promoters GenomicRanges object

In mcjmigdal/xcoredata: data package for xcore

Promoters GenomicRanges object

Description

FANTOM5's hg38 promoters annotated with nearest features in GENCODE ver. 38 annotation and UCSC hg38 knownGene annotation ver. 3.13.0.

Usage

promoters_f5

Format

A GenomicRanges object of length 209911, with 11 metadata columns:

name

Promotor name.

score

Numeric vector.

gene_type_gencode

Gene type of associated gene as defined by GENCODE annotation.

ENTREZID

ENTREZ ID of associated gene as defined by all three annotation sources. Prevalence of annotations: UCSC > GENCODE > FANTOM5.

SYMBOL

Gene symbol of associated gene as defined by all three annotation sources. Prevalence of annotations: UCSC > GENCODE > FANTOM5.

Examples

promoters_f5()

mcjmigdal/xcoredata documentation built on Aug. 27, 2022, 11:03 p.m.