get_overlap_mask: get_overlap_mask

In mcneilllucy/synapsis: An R package to automate the analysis of double-strand break repair during meiosis

Description

creates mask for coincident foci

Usage

get_overlap_mask(
  strands,
  foci_label,
  watershed_stop,
  img_orig_foci,
  watershed_radius,
  watershed_tol
)

Arguments

strands	black white mask of strand channel
foci_label	black and white mask of foci channel
watershed_stop	Stop default watershed method with "on"
img_orig_foci	cropped foci channel
watershed_radius	Radius (ext variable) in watershed method used in foci channel. Defaults to 1 (small)
watershed_tol	Intensity tolerance for watershed method. Defaults to 0.05.

Value

mask with coincident foci on strands

mcneilllucy/synapsis documentation built on Dec. 21, 2021, 3:59 p.m.