keep_cells: keep_cells
In mcneilllucy/synapsis: An R package to automate the analysis of double-strand break repair during meiosis

Deletes objects in mask which are too small, large, oblong i.e. unlikely to be a cell

keep_cells(
  candidate,
  max_cell_area,
  min_cell_area,
  cell_aspect_ratio,
  crowded_cells,
  annotation
)

`candidate`	Mask of individual cell candidates
`max_cell_area,`	Maximum pixel area of a cell candidate
`min_cell_area,`	Minimum pixel area of a cell candidate
`cell_aspect_ratio`	Maximum aspect ratio of blob to be defined as a cell
`crowded_cells`	TRUE or FALSE, defaults to FALSE. Set to TRUE if you
`annotation,`	Choice to output pipeline choices (recommended to knit) have many cells in a frame that almost touch

Mask of cell candidates which meet size criteria

mcneilllucy/synapsis documentation built on Dec. 21, 2021, 3:59 p.m.

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