Description Usage Arguments Value
This group of functions is called by linkage
.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 | r4_1.0_1.0(x, ncores = 1)
r4_1.0_2.0(x, ncores = 1)
r4_1.0_1.1(x, ncores = 1)
r4_1.0_1.3(x, ncores = 1)
r4_1.0_2.1(x, ncores = 1)
r4_1.0_1.2(x, ncores = 1)
r4_1.0_2.2(x, ncores = 1)
r4_2.0_1.1(x, ncores = 1)
r4_2.0_2.1(x, ncores = 1)
r4_2.2_2.2(x, ncores = 1)
r4_2.0_1.2(x, ncores = 1)
r4_2.0_1.3(x, ncores = 1)
r4_1.1_1.2(x, ncores = 1)
r4_1.1_1.3(x, ncores = 1)
r4_1.1_2.2(x, ncores = 1)
r4_1.2_2.1(x, ncores = 1)
r4_1.3_2.1(x, ncores = 1)
r4_2.1_2.2(x, ncores = 1)
r4_1.3_1.2(x, ncores = 1)
r4_1.2_2.2(x, ncores = 1)
r4_1.3_2.2(x, ncores = 1)
r4_2.0_2.0(x, ncores = 1)
r4_1.1_1.1(x, ncores = 1)
r4_1.2_1.2(x, ncores = 1)
r4_2.1_2.1(x, ncores = 1)
r4_1.3_1.3(x, ncores = 1)
|
x |
A frequency table of the different classes of dosages in the progeny. The column names start with |
ncores |
Number of cores to use for parallel processing (deprecated). |
A list with the following items:
r_mat |
A matrix with recombination frequencies for the different phases |
LOD_mat |
A matrix with LOD scores for the different phases |
logL_mat |
A matrix with log likelihood ratios for the different phases |
phasing_strategy |
A character string specifying the phasing strategy. |
possible_phases |
The phases between markers that are possible. Same order and length as column names of output matrices. |
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