N_FACTORS: Various Factor Retention Criteria

In mdsteiner/EFAdiff: Fast and Flexible Implementations of Exploratory Factor Analysis Tools

Various Factor Retention Criteria

Description

Among the most important decisions for an exploratory factor analysis (EFA) is the choice of the number of factors to retain. Several factor retention criteria have been developed for this. With this function, various factor retention criteria can be performed simultaneously. Additionally, the data can be checked for their suitability for factor analysis.

Usage

N_FACTORS(
  x,
  criteria = c("CD", "EKC", "HULL", "KGC", "PARALLEL", "SCREE", "SMT"),
  suitability = TRUE,
  N = NA,
  use = c("pairwise.complete.obs", "all.obs", "complete.obs", "everything",
    "na.or.complete"),
  cor_method = c("pearson", "spearman", "kendall"),
  n_factors_max = NA,
  N_pop = 10000,
  N_samples = 500,
  alpha = 0.3,
  max_iter_CD = 50,
  n_fac_theor = NA,
  method = c("PAF", "ULS", "ML"),
  gof = c("CAF", "CFI", "RMSEA"),
  eigen_type_HULL = c("SMC", "PCA", "EFA"),
  eigen_type_other = c("PCA", "SMC", "EFA"),
  n_factors = 1,
  n_datasets = 1000,
  percent = 95,
  decision_rule = c("means", "percentile", "crawford"),
  show_progress = TRUE,
  ...
)

Arguments

x	data.frame or matrix. Dataframe or matrix of raw data or matrix with correlations. If "CD" is included as a criterion, x must be raw data.
criteria	character. A vector with the factor retention methods to perform. Possible inputs are: "CD", "EKC", "HULL", "KGC", "PARALLEL", "SCREE", and "SMT" (see details). By default, all factor retention methods are performed.
suitability	logical. Whether the data should be checked for suitability for factor analysis using the Bartlett's test of sphericity and the Kaiser-Guttmann criterion (see details). Default is TRUE.
N	numeric. The number of observations. Only needed if x is a correlation matrix.
use	character. Passed to stats::cor if raw data is given as input. Default is "pairwise.complete.obs".
cor_method	character. Passed to stats::cor Default is "pearson".
n_factors_max	numeric. Passed to CD.The maximum number of factors to test against. Larger numbers will increase the duration the procedure takes, but test more possible solutions. Maximum possible is number of variables / 2. Default is NA. If not specified, number of variables / 2 is used.
N_pop	numeric. Passed to CD. Size of finite populations of comparison data. Default is 10000.
N_samples	numeric. Passed to CD. Number of samples drawn from each population. Default is 500.
alpha	numeric. Passed to CD. The alpha level used to test the significance of the improvement added by an additional factor. Default is .30.
max_iter_CD	numeric. Passed to CD. The maximum number of iterations to perform after which the iterative PAF procedure is halted. Default is 50.
n_fac_theor	numeric. Passed to HULL. Theoretical number of factors to retain. The maximum of this number and the number of factors suggested by PARALLEL plus one will be used in the Hull method.
method	character. Passed to EFA in HULL, KGC, SCREE, and PARALLEL. The estimation method to use. One of "PAF", "ULS", or "ML", for principal axis factoring, unweighted least squares, and maximum likelihood, respectively.
gof	character. Passed to HULL. The goodness of fit index to use. Either "CAF", "CFI", or "RMSEA", or any combination of them. If method = "PAF" is used, only the CAF can be used as goodness of fit index. For details on the CAF, see Lorenzo-Seva, Timmerman, and Kiers (2011).
eigen_type_HULL	character. Passed to PARALLEL in HULL. On what the eigenvalues should be found in the parallel analysis. Can be one of "SMC", "PCA", or "EFA". If using "SMC" (default), the diagonal of the correlation matrices is replaced by the squared multiple correlations (SMCs) of the indicators. If using "PCA", the diagonal values of the correlation matrices are left to be 1. If using "EFA", eigenvalues are found on the correlation matrices with the final communalities of an EFA solution as diagonal.
eigen_type_other	character. Passed to KGC, SCREE, and PARALLEL. The same as eigen_type_HULL, but multiple inputs are possible here. Default is to use all inputs, that is, c("PCA", "SMC", "EFA")
n_factors	numeric. Passed to PARALLEL (also within HULL), KGC, and SCREE. Number of factors to extract if "EFA" is included in eigen_type_HULL or eigen_type_other. Default is 1.
n_datasets	numeric. Passed to PARALLEL (also within HULL). The number of datasets to simulate. Default is 1000.
percent	numeric. Passed to PARALLEL (also within HULL). A vector of percentiles to take the simulated eigenvalues from. Default is 95.
decision_rule	character. Passed to PARALLEL (also within HULL). Which rule to use to determine the number of factors to retain. Default is "means", which will use the average simulated eigenvalues. "percentile", uses the percentiles specified in percent. "crawford" uses the 95th percentile for the first factor and the mean afterwards (based on Crawford et al, 2010).
show_progress	logical. Whether a progress bar should be shown in the console. Default is TRUE.
...	Further arguments passed to EFA in PARALLEL (also within HULL) and KGC.

Details

By default, the entered data are checked for suitability for factor analysis using the following methods (see respective documentations for details):

• Bartlett's test of sphericity (see BARTLETT)

• Kaiser-Meyer-Olkin criterion (see KMO)

The available factor retention criteria are the following (see respective documentations for details):

• Comparison data (see CD)

• Empirical Kaiser criterion (see EKC)

• Hull method (see HULL)

• Kaiser-Guttman criterion (see KGC)

• Parallel analysis (see PARALLEL)

• Scree plot (see SCREE)

• Sequential chi-square model tests, RMSEA lower bound, and AIC (see SMT)

Value

A list of class N_FACTORS containing

outputs	A list with the outputs from BARTLETT and KMO and the factor retention criteria.
n_factors	A named vector containing the suggested number of factors from each factor retention criterion.
settings	A list of the settings used.

Examples

# All criteria, with correlation matrix and fit method "ML" (where needed)
# This will throw a warning for CD, as no raw data were specified
nfac_all <- N_FACTORS(test_models$baseline$cormat, N = 500, method = "ML")

# The same as above, but without "CD"
nfac_wo_CD <- N_FACTORS(test_models$baseline$cormat, criteria = c("EKC",
                        "HULL", "KGC", "PARALLEL", "SCREE", "SMT"), N = 500,
                        method = "ML")

# Use PAF instead of ML (this will take a lot longer). For this, gof has
# to be set to "CAF" for the Hull method.
nfac_PAF <- N_FACTORS(test_models$baseline$cormat, criteria = c("EKC",
                      "HULL", "KGC", "PARALLEL", "SCREE", "SMT"), N = 500,
                      gof = "CAF")

# Do KGC and PARALLEL with only "PCA" type of eigenvalues
nfac_PCA <- N_FACTORS(test_models$baseline$cormat, criteria = c("EKC",
                      "HULL", "KGC", "PARALLEL", "SCREE", "SMT"), N = 500,
                      method = "ML", eigen_type_other = "PCA")

# Use raw data, such that CD can also be performed
nfac_raw <- N_FACTORS(GRiPS_raw, method = "ML")

mdsteiner/EFAdiff documentation built on Jan. 10, 2023, 8:54 a.m.