inst/MultAdjApp/ui.r
In medianasoft/MedianaDesigner: Power and Sample Size Calculations for Clinical Trials
library(shiny)
suppressPackageStartupMessages(library(shinydashboard))
library(MedianaDesigner)
library(shinyMatrix)
shinyUI(
dashboardPage(
dashboardHeader(title = "MedianaDesigner"),
dashboardSidebar(
sidebarMenu(id = "sidebar",
menuItem("Design parameters", tabName = "design_parameters", icon = icon("sliders-h")),
menuItem("Endpoint parameters", tabName = "endpoint_parameters", icon = icon("sliders-h")),
menuItem("Multiplicity adjustment", tabName = "adjustment_parameters", icon = icon("sliders-h")),
menuItem("General parameters", tabName = "general_parameters", icon = icon("sliders-h")),
menuItem("Simulation results", tabName = "simulation", icon = icon("table")),
menuItem("Simulation report", tabName = "report", icon = icon("file"))
)
),
dashboardBody(
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "main.css?2")
),
tabItems(
tabItem(tabName = "design_parameters",
fluidRow(
box(
title = "Traditional design with multiple outcomes",
solidHeader = FALSE,
collapsible = FALSE,
width = 12,
tags$h5("The web application computes key operating characteristics of a traditional design with multiple objectives, including"),
tags$h5("Trials with a single endpoint and several dose-control comparisons."),
tags$h5("Trials with a single dose-control comparison and several endpoints"),
tags$h5("Trials with several dose-control comparisons and several endpoints")
)
),
fluidRow(
column(6, class = "col-md-6",
box(
title = "Dose-placebo comparisons",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "n_comparisons", label = "Number of dose-placebo comparisons", value = 3, min = 1, max = 5)
)
),
column(6, class = "col-md-6",
box(
title = "Clinical endpoints",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "n_endpoints", label = "Number of endpoints", value = 1, min = 1, max = 5)
)
)
),
fluidRow(
column(12, class = "col-md-12",
box(
title = "Sample size",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("SampleSize"),
tags$p(class = "help-block",
"Number of enrolled patients in each trial arm.")
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Endpoint parameters."),
actionButton("jump_to_panel2", "Next tab")
)
)
),
tabItem(tabName = "endpoint_parameters",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Endpoint type",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("endpoint_index", label = "Primary endpoint's type", c("Normal" = 1, "Binary" = 2)),
selectInput("direction_index", label = "Direction of favorable outcome", c("Higher" = 1, "Lower" = 2))
)
)
),
fluidRow(
column(12, class = "col-md-12",
box(
title = "Treatment effect assumptions",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("TreatmentEffectAssumptions")
)
)
),
conditionalPanel(
condition = "input.n_endpoints >= 2",
fluidRow(
column(12, class="col-lg-12",
box(
title = "Endpoint correlation matrix",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndpointCorrelation"),
tags$p(class = "help-block",
"Pairwise correlation coefficients for the endpoint-specified test statistics.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Multiplicity adjustment."),
actionButton("jump_to_panel3", "Next tab")
)
)
),
tabItem(tabName = "adjustment_parameters",
fluidRow(
column(12, class="col-lg-12",
box(
title = "Hypothesis definitions",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("HypothesisList")
)
)
),
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints == 1",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Multiple testing procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("comp_mult_test", label = "Multiple testing procedure", c("Bonferroni" = 1, "Holm" = 2, "Hochberg" = 3, "Hommel" = 4, "Fixed-sequence" = 5, "Chain" = 6))
)
),
conditionalPanel(
condition = "input.comp_mult_test <= 4 || input.comp_mult_test == 6",
column(6, class = "col-md-6",
box(
title = "Initial hypothesis weights",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompHypothesisWeights"),
tags$p(class = "help-block",
"The hypothesis weights range from 0 to 1 and must add up to 1.")
)
)
),
conditionalPanel(
condition = "input.comp_mult_test == 5",
column(6, class = "col-md-6",
box(
title = "Hypothesis testing sequence",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompSequence"),
tags$p(class = "help-block",
"The hypothesis testing sequence for the fixed-sequence procedure.")
)
)
)
),
conditionalPanel(
condition = "input.comp_mult_test == 6",
fluidRow(
column(12, class = "col-lg-12",
box(
title = "Transition parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompTransition"),
tags$p(class = "help-block",
"The transition parameters range from 0 to 1, the diagonal entries must be 0 and the transition parameters in each row must add up to 1.")
)
)
)
)
),
conditionalPanel(
condition = "input.n_comparisons == 1 && input.n_endpoints >= 2",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Multiple or global testing procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("end_mult_test", label = "Multiple or global testing procedure", c("Bonferroni" = 1, "Holm" = 2, "Hochberg" = 3, "Hommel" = 4, "Fixed-sequence" = 5, "Chain" = 6, "O'Brien" = 7))
)
),
conditionalPanel(
condition = "input.end_mult_test <= 4 || input.end_mult_test == 6",
column(6, class = "col-md-6",
box(
title = "Initial hypothesis weights",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndHypothesisWeights"),
tags$p(class = "help-block",
"The hypothesis weights range from 0 to 1 and must add up to 1.")
)
)
),
conditionalPanel(
condition = "input.end_mult_test == 5",
column(6, class = "col-md-6",
box(
title = "Hypothesis testing sequence",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndSequence"),
tags$p(class = "help-block",
"The hypothesis testing sequence for the fixed-sequence procedure.")
)
)
)
),
conditionalPanel(
condition = "input.end_mult_test == 6",
fluidRow(
column(12, class = "col-lg-12",
box(
title = "Transition parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndTransition"),
tags$p(class = "help-block",
"The transition parameters range from 0 to 1, the diagonal entries must be 0 and the transition parameters in each row must add up to 1.")
)
)
)
)
),
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints >= 2",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Gatekeeping procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("gate_mult_test", label = "Component of gatekeeping procedure", c("Holm" = 1, "Hochberg" = 2, "Hommel" = 3)),
selectInput("mult_method", label = "Mixture method used in the gatekeeping procedure", c("Standard" = 1, "Modified" = 2, "Enhanced" = 3))
)
),
column(6, class = "col-md-6",
box(
title = "Truncation parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("TruncationParameters"),
tags$p(class = "help-block",
"The family-specific truncation parameters element range from 0 to 1. The last parameter may be equal to 1 whereas the other parameters must be strictly less than 1.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to General parameters."),
actionButton("jump_to_panel4", "Next tab")
)
)
),
tabItem(tabName = "general_parameters",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Patient dropout rate",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "dropout_rate", label = "Patient dropout rate (%)", value = 5, min = 0, max = 50),
tags$p(class = "help-block",
"Dropout rate at the end of the treatment period.")
)
)
),
fluidRow(
column(6, class = "col-md-6",
box(
title = "Alpha",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "alpha", label = "Overall Type I error rate", value = 0.025),
tags$p(class = "help-block",
"One-sided Type I error rate.")
)
),
column(6, class = "col-md-6",
box(
title = "Number of simulations",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "nsims", label = "Number of simulation runs", value = 10000)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Simulation results."),
actionButton("jump_to_panel5", "Next tab")
)
)
),
tabItem(tabName = "simulation",
fluidRow(
box(
title = "Summary of simulation results",
status = "primary",
solidHeader = FALSE,
collapsible = FALSE,
width = 12
),
# Traditional multiplicity adjustments or gatekeeping procedures
conditionalPanel(
condition = "(input.n_comparisons >= 2 && input.n_endpoints == 1) | (input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test <= 6) | (input.n_comparisons >= 2 && input.n_endpoints >= 2)",
column(12, class="col-lg-12",
box(
title = "Hypothesis-specific power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("HypothesisPower1"),
tags$p(class = "help-block",
"Power: Probability of rejecting each hypothesis of no effect without a multiplicity adjustment. Adjusted power: Probability of rejecting each hypothesis of no effect using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
),
# Global testing procedure
conditionalPanel(
condition = "input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test == 7",
column(12, class="col-lg-12",
box(
title = "Hypothesis-specific power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("HypothesisPower2"),
tags$p(class = "help-block",
"Power: Probability of rejecting each hypothesis of no effect without a multiplicity adjustment.")
)
),
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower2"),
tags$p(class = "help-block",
"Global power: Probability of rejecting at least one hypothesis of no effect using the specified global testing approach.")
)
)
),
# Traditional multiplicity adjustments
conditionalPanel(
condition = "(input.n_comparisons >= 2 && input.n_endpoints == 1) | (input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test <= 6)",
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower1"),
tags$p(class = "help-block",
"Disjunctive power: Probability of rejecting at least one hypothesis of no effect using a multiplicity adjustment based on the specified multiple testing procedure. Conjunctive power: Probability of rejecting all hypotheses of no effect using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
),
# Gatekeeping procedures
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints >= 2",
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower3"),
tags$p(class = "help-block",
"Disjunctive power: Probability of rejecting at least one hypothesis of no effect within each endpoint family using a multiplicity adjustment based on the specified multiple testing procedure. Conjunctive power: Probability of rejecting all hypotheses of no effect within each endpoint family using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Simulation report."),
actionButton("jump_to_panel6", "Next tab")
)
)
),
tabItem(tabName = "report",
fluidRow(
box(
title = "Create a simulation report",
background = "red",
width = 12,
tags$p("Click the Download button to create and save a detailed simulation report in a Microsoft Word format."),
downloadButton("DownloadResults", "Download")
)
)
)
)
)
)
)
medianasoft/MedianaDesigner documentation built on Aug. 28, 2023, 6:33 p.m.
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library(shiny)
suppressPackageStartupMessages(library(shinydashboard))
library(MedianaDesigner)
library(shinyMatrix)
shinyUI(
dashboardPage(
dashboardHeader(title = "MedianaDesigner"),
dashboardSidebar(
sidebarMenu(id = "sidebar",
menuItem("Design parameters", tabName = "design_parameters", icon = icon("sliders-h")),
menuItem("Endpoint parameters", tabName = "endpoint_parameters", icon = icon("sliders-h")),
menuItem("Multiplicity adjustment", tabName = "adjustment_parameters", icon = icon("sliders-h")),
menuItem("General parameters", tabName = "general_parameters", icon = icon("sliders-h")),
menuItem("Simulation results", tabName = "simulation", icon = icon("table")),
menuItem("Simulation report", tabName = "report", icon = icon("file"))
)
),
dashboardBody(
tags$head(
tags$link(rel = "stylesheet", type = "text/css", href = "main.css?2")
),
tabItems(
tabItem(tabName = "design_parameters",
fluidRow(
box(
title = "Traditional design with multiple outcomes",
solidHeader = FALSE,
collapsible = FALSE,
width = 12,
tags$h5("The web application computes key operating characteristics of a traditional design with multiple objectives, including"),
tags$h5("Trials with a single endpoint and several dose-control comparisons."),
tags$h5("Trials with a single dose-control comparison and several endpoints"),
tags$h5("Trials with several dose-control comparisons and several endpoints")
)
),
fluidRow(
column(6, class = "col-md-6",
box(
title = "Dose-placebo comparisons",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "n_comparisons", label = "Number of dose-placebo comparisons", value = 3, min = 1, max = 5)
)
),
column(6, class = "col-md-6",
box(
title = "Clinical endpoints",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "n_endpoints", label = "Number of endpoints", value = 1, min = 1, max = 5)
)
)
),
fluidRow(
column(12, class = "col-md-12",
box(
title = "Sample size",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("SampleSize"),
tags$p(class = "help-block",
"Number of enrolled patients in each trial arm.")
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Endpoint parameters."),
actionButton("jump_to_panel2", "Next tab")
)
)
),
tabItem(tabName = "endpoint_parameters",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Endpoint type",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("endpoint_index", label = "Primary endpoint's type", c("Normal" = 1, "Binary" = 2)),
selectInput("direction_index", label = "Direction of favorable outcome", c("Higher" = 1, "Lower" = 2))
)
)
),
fluidRow(
column(12, class = "col-md-12",
box(
title = "Treatment effect assumptions",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("TreatmentEffectAssumptions")
)
)
),
conditionalPanel(
condition = "input.n_endpoints >= 2",
fluidRow(
column(12, class="col-lg-12",
box(
title = "Endpoint correlation matrix",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndpointCorrelation"),
tags$p(class = "help-block",
"Pairwise correlation coefficients for the endpoint-specified test statistics.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Multiplicity adjustment."),
actionButton("jump_to_panel3", "Next tab")
)
)
),
tabItem(tabName = "adjustment_parameters",
fluidRow(
column(12, class="col-lg-12",
box(
title = "Hypothesis definitions",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("HypothesisList")
)
)
),
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints == 1",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Multiple testing procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("comp_mult_test", label = "Multiple testing procedure", c("Bonferroni" = 1, "Holm" = 2, "Hochberg" = 3, "Hommel" = 4, "Fixed-sequence" = 5, "Chain" = 6))
)
),
conditionalPanel(
condition = "input.comp_mult_test <= 4 || input.comp_mult_test == 6",
column(6, class = "col-md-6",
box(
title = "Initial hypothesis weights",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompHypothesisWeights"),
tags$p(class = "help-block",
"The hypothesis weights range from 0 to 1 and must add up to 1.")
)
)
),
conditionalPanel(
condition = "input.comp_mult_test == 5",
column(6, class = "col-md-6",
box(
title = "Hypothesis testing sequence",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompSequence"),
tags$p(class = "help-block",
"The hypothesis testing sequence for the fixed-sequence procedure.")
)
)
)
),
conditionalPanel(
condition = "input.comp_mult_test == 6",
fluidRow(
column(12, class = "col-lg-12",
box(
title = "Transition parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("CompTransition"),
tags$p(class = "help-block",
"The transition parameters range from 0 to 1, the diagonal entries must be 0 and the transition parameters in each row must add up to 1.")
)
)
)
)
),
conditionalPanel(
condition = "input.n_comparisons == 1 && input.n_endpoints >= 2",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Multiple or global testing procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("end_mult_test", label = "Multiple or global testing procedure", c("Bonferroni" = 1, "Holm" = 2, "Hochberg" = 3, "Hommel" = 4, "Fixed-sequence" = 5, "Chain" = 6, "O'Brien" = 7))
)
),
conditionalPanel(
condition = "input.end_mult_test <= 4 || input.end_mult_test == 6",
column(6, class = "col-md-6",
box(
title = "Initial hypothesis weights",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndHypothesisWeights"),
tags$p(class = "help-block",
"The hypothesis weights range from 0 to 1 and must add up to 1.")
)
)
),
conditionalPanel(
condition = "input.end_mult_test == 5",
column(6, class = "col-md-6",
box(
title = "Hypothesis testing sequence",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndSequence"),
tags$p(class = "help-block",
"The hypothesis testing sequence for the fixed-sequence procedure.")
)
)
)
),
conditionalPanel(
condition = "input.end_mult_test == 6",
fluidRow(
column(12, class = "col-lg-12",
box(
title = "Transition parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("EndTransition"),
tags$p(class = "help-block",
"The transition parameters range from 0 to 1, the diagonal entries must be 0 and the transition parameters in each row must add up to 1.")
)
)
)
)
),
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints >= 2",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Gatekeeping procedure",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
selectInput("gate_mult_test", label = "Component of gatekeeping procedure", c("Holm" = 1, "Hochberg" = 2, "Hommel" = 3)),
selectInput("mult_method", label = "Mixture method used in the gatekeeping procedure", c("Standard" = 1, "Modified" = 2, "Enhanced" = 3))
)
),
column(6, class = "col-md-6",
box(
title = "Truncation parameters",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
uiOutput("TruncationParameters"),
tags$p(class = "help-block",
"The family-specific truncation parameters element range from 0 to 1. The last parameter may be equal to 1 whereas the other parameters must be strictly less than 1.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to General parameters."),
actionButton("jump_to_panel4", "Next tab")
)
)
),
tabItem(tabName = "general_parameters",
fluidRow(
column(6, class = "col-md-6",
box(
title = "Patient dropout rate",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "dropout_rate", label = "Patient dropout rate (%)", value = 5, min = 0, max = 50),
tags$p(class = "help-block",
"Dropout rate at the end of the treatment period.")
)
)
),
fluidRow(
column(6, class = "col-md-6",
box(
title = "Alpha",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "alpha", label = "Overall Type I error rate", value = 0.025),
tags$p(class = "help-block",
"One-sided Type I error rate.")
)
),
column(6, class = "col-md-6",
box(
title = "Number of simulations",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
numericInput(inputId = "nsims", label = "Number of simulation runs", value = 10000)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Simulation results."),
actionButton("jump_to_panel5", "Next tab")
)
)
),
tabItem(tabName = "simulation",
fluidRow(
box(
title = "Summary of simulation results",
status = "primary",
solidHeader = FALSE,
collapsible = FALSE,
width = 12
),
# Traditional multiplicity adjustments or gatekeeping procedures
conditionalPanel(
condition = "(input.n_comparisons >= 2 && input.n_endpoints == 1) | (input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test <= 6) | (input.n_comparisons >= 2 && input.n_endpoints >= 2)",
column(12, class="col-lg-12",
box(
title = "Hypothesis-specific power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("HypothesisPower1"),
tags$p(class = "help-block",
"Power: Probability of rejecting each hypothesis of no effect without a multiplicity adjustment. Adjusted power: Probability of rejecting each hypothesis of no effect using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
),
# Global testing procedure
conditionalPanel(
condition = "input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test == 7",
column(12, class="col-lg-12",
box(
title = "Hypothesis-specific power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("HypothesisPower2"),
tags$p(class = "help-block",
"Power: Probability of rejecting each hypothesis of no effect without a multiplicity adjustment.")
)
),
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower2"),
tags$p(class = "help-block",
"Global power: Probability of rejecting at least one hypothesis of no effect using the specified global testing approach.")
)
)
),
# Traditional multiplicity adjustments
conditionalPanel(
condition = "(input.n_comparisons >= 2 && input.n_endpoints == 1) | (input.n_comparisons == 1 && input.n_endpoints >= 2 && input.end_mult_test <= 6)",
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower1"),
tags$p(class = "help-block",
"Disjunctive power: Probability of rejecting at least one hypothesis of no effect using a multiplicity adjustment based on the specified multiple testing procedure. Conjunctive power: Probability of rejecting all hypotheses of no effect using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
),
# Gatekeeping procedures
conditionalPanel(
condition = "input.n_comparisons >= 2 && input.n_endpoints >= 2",
column(12, class="col-lg-12",
box(
title = "Overall power",
status = "primary",
solidHeader = TRUE,
collapsible = TRUE,
width = NULL,
tableOutput("OverallPower3"),
tags$p(class = "help-block",
"Disjunctive power: Probability of rejecting at least one hypothesis of no effect within each endpoint family using a multiplicity adjustment based on the specified multiple testing procedure. Conjunctive power: Probability of rejecting all hypotheses of no effect within each endpoint family using a multiplicity adjustment based on the specified multiple testing procedure.")
)
)
)
),
fluidRow(
box(
title = "Next step",
background = "red",
width = 12,
tags$p("Proceed to Simulation report."),
actionButton("jump_to_panel6", "Next tab")
)
)
),
tabItem(tabName = "report",
fluidRow(
box(
title = "Create a simulation report",
background = "red",
width = 12,
tags$p("Click the Download button to create and save a detailed simulation report in a Microsoft Word format."),
downloadButton("DownloadResults", "Download")
)
)
)
)
)
)
)
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