In meerapatelmd/OncoRegimenFinder: Derive Oncology Treatment Regimens from the OMOP CDM

knitr::opts_chunk$set(
  tidy = 'styler',
  collapse = TRUE,
  comment = "#>",
  cache = TRUE
)

Load Packages

library(OncoRegimenFinder)

Set Parameters

cdmDatabaseSchema <- "omop_cdm_2"
writeDatabaseSchema <- "oncoregimenfinder"
vocabularyTable <- "vocabulary"
drugExposureIngredientTable <- "ingredient_exposure"
regimenTable <- "regimen"
cohortTable <- "cohort"
regimenIngredientTable <- "regimen_ingredient"

Run OncoRegimenFinder

runORF(conn = conn,
       cdmDatabaseSchema = cdmDatabaseSchema,
       writeDatabaseSchema = writeDatabaseSchema,
       vocabularyTable = vocabularyTable,
       drugExposureIngredientTable = drugExposureIngredientTable,
       cohortTable = cohortTable,
       regimenTable = regimenTable,
       regimenIngredientTable = regimenIngredientTable)

meerapatelmd/OncoRegimenFinder documentation built on Jan. 1, 2021, 9:25 a.m.