Man pages for meghapadi/ALPACA

alpacaMain ALPACA function
CommunityStructureRotationComparing node community membership between two networks
computeDWBMmat.mscaleDifferential modularity matrix
computeWBMmatCompute modularity matrix for weighted bipartite network
DeltaZAnalysisEdge subtraction method (CONDOR optimizaton)
DeltaZAnalysis.LouvainEdge subtraction method (Louvain optimizaton)
ExtractTopGenesExtract core target genes in differential modules
genlouvainGeneralized Louvain optimization
GOtab.to.genesThe top GO term associated genes in each module
go.to.genesMap GO terms to gene symbols
list.to.goGO term enrichment for a list of gene sets
metanetworkCreate metanetwork for Louvain optimization
node.to.geneRemove tags from gene names
RotationAnalysisCommunity comparison method (CONDOR optimizaton)
RotationAnalysis.LouvainCommunity comparison method (CONDOR optimizaton)
simulateNetworkSimulated networks
TestNodeRankEnrichment in ranked list
tidyconfigRenumbering community membership vector
TopEnsembl.to.TopSymTranslating gene identifiers to gene symbols
WBM.louvainGeneralized Louvain method for bipartite networks
meghapadi/ALPACA documentation built on Oct. 20, 2017, 6:40 a.m.