CellPopulation-class: Class '"CellPopulation"'

In mehrnoushmalek/flowDensity: Sequential Flow Cytometry Data Gating

Class "CellPopulation"

Description

This class represents the output of 'flowDensity(.)' function from flowDensity package.

Objects from the Class

Objects can be created by calls of the form new("CellPopulation", ...).

Slots

flow.frame:

Object of class "flowFrame" representing the flow cytometry data of the cell population

proportion:

Object of class "numeric" representing proportion of the cell population with respect to its parent cell population

cell.count:

Object of class "numeric" representing cell count of the cell population

channels:

Object of class "character" representing channel names corresponding to the 2 dimensions where the cell population is extracted

position:

Object of class "logical" representing position of the cell population in the 2-dimensional space

gates:

Object of class "numeric" representing thresholds on each channel used to gate the cell population

filter:

Object of class "matrix" representing boundary of the cell population using a convex polygon

index:

Object of class "numeric" representing indices of the data points in the cell population with respect to its parent cell population

Methods

flowDensity

signature(obj = "CellPopulation", channels = "ANY", position = "logical", singlet.gate = "missing"): ...

flowDensity

signature(obj = "CellPopulation", channels = "missing", position = "missing", singlet.gate = "logical"): ...

getflowFrame

signature(obj = "CellPopulation"): ...

plot

signature(x = "flowFrame", y = "CellPopulation"): ...

Author(s)

Jafar Taghiyar <email: <[e-mail]>>

Examples

showClass("CellPopulation")

mehrnoushmalek/flowDensity documentation built on Oct. 31, 2023, 1:27 a.m.