DemoPlot: Demographic figure for single cells

In meichendong/SCDC: Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets

Demographic figure for single cells

Description

Create a demographic figure for the input single cell dataset for each of the subject

Usage

DemoPlot(
  eset,
  cluster,
  sample,
  select.ct,
  Palette = c("#999999", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2",
    "#D55E00", "#CC79A7")
)

Arguments

eset	ExpressionSet object of the single cell data
cluster	the variable name for "cell types" or "cluster name"
sample	the variable name for subjects
select.ct	the vector of cell types of interest, for example, c("alpha","beta")
Palette	the color palette to be used in the demographic figure

Value

A figure showing the number of cells and percentage of cell types for single cells after clustering

meichendong/SCDC documentation built on Jan. 26, 2023, 5:08 p.m.