generateBulk_allcells: Construct Pseudo bulk samples
In meichendong/SCDC: Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets

generateBulk_allcells

R Documentation

Construct Pseudo bulk samples

Construct Pseudo bulk samples by actual number of cells per subject

generateBulk_allcells(eset, ct.varname, sample, disease = NULL, ct.sub = NULL)

`eset`	ExpressionSet object for single cells
`ct.varname`	variable name for 'cell types'
`sample`	variable name for subject/samples
`disease`	indicate the health condition of subjects
`ct.sub`	a subset of cell types that are selected to construct pseudo bulk samples. If NULL, then all cell types are used.

pseudo bulk samples ExpressionSet, and actual cell-type proportions

meichendong/SCDC documentation built on Jan. 26, 2023, 5:08 p.m.

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README.md

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