|compute_gene_score||Compute gene score Computes gene scores for each gene within...|
|compute_perturbed_genes||Compute perturbed genes Find the top fraction of genes that...|
|compute_sample_scores||Compute sample scores for each pathway|
|compute_zscore||Computes the thresholded Z score Plots the Z score using...|
|mdp||Molecular Degree of Perturbation|
|pathway_summary||print pathways summary plot for pathways and sample score...|
|smdp_plot||Plot sMDP scores|
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