Files in melmasri/HPprediction
Host-parasite prediction based on phylogeny

.Rbuildignore
._pkgdown.yml.swo
._pkgdown.yml.swp
.gitignore
DESCRIPTION
NAMESPACE
R/EB.distance.R R/ICM_est.R R/ICM_est_over_acc.R R/ana.table.R R/arrange.tree.R R/cross.validate.fold.R R/cross.validate.set.R R/data.R R/eb.phylo.R R/fullJoint_est.R R/get.max.depth.R R/heights.phylo.R R/lof.R R/lower.tri.Index.R R/network_clean.R R/network_est.R R/plot_Z.R R/plot_degree.R R/rEta.EB.local.R R/rEta.cophenetic.R R/rEta.over.acc.R R/rExp.R R/rExp2.R R/raffinity.MH.R R/rg.R R/rocCurves.R R/row_extract.R R/sample_parameter.R R/topPairs.R R/upper.tri.Index.R R/zzz.R README.Rmd README.md
_pkgdown.yml
data/gmpd.rda
data/mammal_supertree.rda
docs/404.html
docs/articles/HPprediction.html
docs/articles/HPprediction_files/figure-html/comparison_plots-1.png
docs/articles/HPprediction_files/figure-html/comparison_plots-2.png
docs/articles/HPprediction_files/figure-html/diagnostics-1.png
docs/articles/HPprediction_files/figure-html/plotDD-1.png
docs/articles/HPprediction_files/figure-html/plotZ-1.png
docs/articles/HPprediction_files/figure-html/plotZ_lof-1.png
docs/articles/HPprediction_files/figure-html/traceplots-1.png
docs/articles/HPprediction_files/figure-html/traceplots-2.png
docs/articles/HPprediction_files/figure-html/traceplots-3.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/gmpd.html
docs/reference/index.html
docs/reference/lof.html
docs/reference/mammal_supertree.html
docs/reference/network_clean.html
docs/reference/network_est.html
docs/reference/plot_Z.html
docs/reference/plot_degree.html
docs/reference/rocCurves.html
docs/reference/sample_parameter.html
docs/reference/topPairs.html
man/gmpd.Rd man/lof.Rd man/mammal_supertree.Rd man/network_clean.Rd man/network_est.Rd man/plot_Z.Rd man/plot_degree.Rd man/rocCurves.Rd man/sample_parameter.Rd man/topPairs.Rd tests/example-GMPD/data/download_tree.R tests/example-GMPD/data/load_GMPD.R tests/example-GMPD/extras/main.NN.R tests/example-GMPD/extras/mainCV_network_latentnet.R tests/example-GMPD/extras/paper-plots.R tests/example-GMPD/extras/runscript.R tests/example-GMPD/mainCV-uncertain_network.R tests/example-GMPD/mainCV_network.R tests/example-GMPD/mainWrapper.R tests/example-GMPD/main_network.R vignettes/HPprediction.Rmd
vignettes/rescv.rds
melmasri/HPprediction documentation built on May 2, 2020, 11:09 a.m.