topPairs: A function to list the top predicted interactions from a...
In melmasri/HPprediction: Host-parasite prediction based on phylogeny
Description
Usage
Arguments
Value
Examples
Description
This pulls out the top predicted interactions from a model
Usage
1
topPairs(P, Z, topX = 10)
Arguments
P
the estimated posterior probability interaction matrix
Z
the observed bipartite interaction matrix
topX
number of interactions to return (default is 10)
Value
Returns a datafame of Host, Parasite, and p(interaction) with length determined by topX (default is 10)
Examples
1
2
3
4
## Not run:
topPairs(P, Z, topX=15)
## End(Not run)
melmasri/HPprediction documentation built on May 2, 2020, 11:09 a.m.
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Description Usage Arguments Value Examples
Description
This pulls out the top predicted interactions from a model
Usage
1 | topPairs(P, Z, topX = 10)
|
Arguments
P |
the estimated posterior probability interaction matrix |
Z |
the observed bipartite interaction matrix |
topX |
number of interactions to return (default is 10) |
Value
Returns a datafame of Host, Parasite, and p(interaction) with length determined by topX (default is 10)
Examples
1 2 3 4 | ## Not run:
topPairs(P, Z, topX=15)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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