ytracks.regionalplot: Generate a Base Tracks Object for Regionalplots

In merns/postgwas: GWAS Post-Processing Utilities

Description

This is a function to construct a data frame listing y axis bounds for tracks in the regionalplot function.

Usage

  ytracks.regionalplot(
    ylim.upper, 
    ylim.space, 
    plot.genes = TRUE, 
    plot.ld = TRUE, 
    plot.variants = FALSE, 
    var.options
  )

Arguments

ylim.upper	numeric(1). The height of the plot starting at 0, i.e. the maximum scale of the p-value graph.
ylim.space	numeric(1). A default value for gaps between tracks.
plot.genes	boolean(1). Whether to add information for a gene track.
plot.ld	boolean(1). Whether to add information for an LD track.
plot.variants	boolean(1). Whether to add information for a rare variant track.
var.options	list. Only needed when plot.variants = TRUE, should then be the same list as passed to the regionalplot function.

Details

See also the last example of the regionalplot function, where the use of the tracks function is outlined.

Value

A data frame with each track forming a row and the columns listing the properties (see examples).

See Also

regionalplot

Examples

  ytracks.regionalplot(ylim.upper=12, ylim.space=0.1)

merns/postgwas documentation built on May 22, 2019, 6:53 p.m.