Description Usage Arguments Value
plots a standard set of diagnostic maps
1 2 3 4 5 |
plot_set |
integer-vector defining plots to create
|
Report |
tagged list of outputs from TMB model via |
Sdreport |
Standard deviation outputs from TMB model via |
Xlim |
xlimits for each panel |
Ylim |
ylimits for each panel |
TmbData |
optional tagged list of outputs from fit$data_list or VAST::make_data |
spatial_list |
required for Method == Stream_network, optional for other spatial models, tagged list of outputs from |
Panel |
Whether to plot years for a given category ( |
DirName |
Directory (absolute path) |
PlotName |
plot names are automatically generated but option to add a modifier |
category_names |
character vector specifying names for different categories (only used for R package |
covar_names |
character vector specifying covariate names for labeling figures |
legend |
Boolean whether to plot legend or not |
textmargin |
option to include y-axis text |
... |
arguments passed to |
Mat_xt a matrix (rows: modeled knots; column: modeled year) for plotted output of last element of plot_set
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