Description Usage Arguments Value
View source: R/plot_biomass_index.R
plots an index proportion to population abundance
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TmbData |
Formatted data inputs, from 'VAST::make_data(...)' |
Sdreport |
output from fit$parameter_estimates$SD |
DirName |
Directory for saving plot and table |
PlotName |
Name for plot |
interval_width |
width for confidence intervals |
strata_names |
names for spatial strata |
category_names |
names for categories or a label if no categories are used |
use_biascorr |
Boolean, whether to use bias-corrected estimates if available |
plot_legend |
Add legend for labelling colors |
total_area_km2 |
Total area for calculating a design-based estimator using one design-stratum (only recommended for model exploration) |
plot_log |
Boolean, whether to plot y-axis in log-scale |
width |
plot width in inches |
height |
plot height in inches |
... |
Other inputs to 'par()' |
Return Tagged list of output
table of index estimates by stratum and year, e.g., for including in an assessment model
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