Files in metaOmics/preproc
Preprocessing of Normalized Gene Expression Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/annotate.R
R/filter.R
R/impute.R
R/merge.R
R/pool.replicate.R
R/preproc.option.R
R/read.expr.R
R/study.R
README.md
data/datasets.eg.rda
data/preproc.option.R
data/study.eg.rda
man/Annotate-Study-method.Rd
man/Annotate-matrix-method.Rd
man/Annotate.Rd
man/DTYPE.RNAseq.FPKM.Rd
man/DTYPE.RNAseq.count.Rd
man/DTYPE.all.Rd
man/DTYPE.continuous.Rd
man/DTYPE.discrete.Rd
man/DTYPE.microarray.Rd
man/Filter.Rd
man/ID.TYPE.EntrezID.Rd
man/ID.TYPE.RefSeqID.Rd
man/ID.TYPE.all.Rd
man/ID.TYPE.geneSymbol.Rd
man/ID.TYPE.probeID.Rd
man/IMPUTE.method.all.Rd
man/IMPUTE.method.knn.Rd
man/IMPUTE.method.remove.Rd
man/Impute-Study-method.Rd
man/Impute-matrix-method.Rd
man/Impute.Rd
man/Merge.Rd
man/NTYPE.all.Rd
man/NTYPE.continuous.Rd
man/NTYPE.discrete.Rd
man/PLATFORM.GenePLATFORM.Mouse.Genome.430.2.0.Rd
man/PLATFORM.HumanHT.12.V3.Bead.Array.Rd
man/PLATFORM.HumanHT.12.V4.Bead.Array.Rd
man/PLATFORM.HumanWG.6.V1.Bead.Array.Rd
man/PLATFORM.HumanWG.6.V2.Bead.Array.Rd
man/PLATFORM.HumanWG.V2.Bead.Array.Rd
man/PLATFORM.MouseWG.6.v1.0.Bead.Array.Rd
man/PLATFORM.MouseWG.6.v2.0.Bead.Array.Rd
man/PLATFORM.Rat.v1.0.Bead.Array.Rd
man/PLATFORM.all.Rd
man/PLATFORM.hgu133a.Rd
man/PLATFORM.hgu133b.Rd
man/PLATFORM.hgu133plus2.Rd
man/PLATFORM.hgu95a.Rd
man/PLATFORM.hgu95av2.Rd
man/PLATFORM.hgu95b.Rd
man/PLATFORM.hgu95c.Rd
man/PLATFORM.hgu95d.Rd
man/PLATFORM.hgu95e.Rd
man/PLATFORM.hgug4100a.Rd
man/PLATFORM.hgug4101a.Rd
man/PLATFORM.hgug4110b.Rd
man/PLATFORM.hgug4111a.Rd
man/PLATFORM.hgug4112a.Rd
man/PLATFORM.mgu74a.Rd
man/PLATFORM.mgu74av2.Rd
man/PLATFORM.mgu74b.Rd
man/PLATFORM.mgu74bv2.Rd
man/PLATFORM.mgu74c.Rd
man/PLATFORM.mgu74cv2.Rd
man/PLATFORM.mgug4104a.Rd
man/PLATFORM.mgug4120a.Rd
man/PLATFORM.mgug4121a.Rd
man/PLATFORM.mgug4122a.Rd
man/PLATFORM.moe430a.Rd
man/PLATFORM.moe430b.Rd
man/PLATFORM.rat2302.Rd
man/PLATFORM.rgu34a.Rd
man/PLATFORM.rgu34b.Rd
man/PLATFORM.rgu34c.Rd
man/PLATFORM.rgug4105a.Rd
man/PLATFORM.rgug4130a.Rd
man/PLATFORM.rgug4131a.Rd
man/PoolReplicate-Study-method.Rd
man/PoolReplicate-matrix-method.Rd
man/PoolReplicate.Rd
man/REPLICATE.IQR.Rd
man/REPLICATE.all.Rd
man/REPLICATE.average.Rd
man/REPLICATE.largest.Rd
man/ReadClinical.Rd
man/ReadExpr.Rd
man/SPECIES.all.Rd
man/SPECIES.entrez.all.Rd
man/SPECIES.entrez.human.Rd
man/SPECIES.entrez.mouse.Rd
man/SPECIES.entrez.rat.Rd
man/SPECIES.human.Rd
man/SPECIES.mouse.Rd
man/SPECIES.rat.Rd
man/SPECIES.refseq.all.Rd
man/SPECIES.refseq.human.Rd
man/SPECIES.refseq.mouse.Rd
man/SPECIES.refseq.rat.Rd
man/STYPE.all.Rd
man/STYPE.multiple.Rd
man/STYPE.single.Rd
man/Study-class.Rd
man/TO.MATRIX.clinicals.Rd
man/TO.MATRIX.datasets.Rd
man/datasets.eg.Rd
man/is.continuous.Rd
man/is.discrete.Rd
man/meta-methods.Rd
man/meta.Rd
man/ntype-methods.Rd
man/ntype.Rd
man/print.Study.Rd
man/setClinical.Rd
man/show-Study-method.Rd
man/study.eg.Rd
man/stype-methods.Rd
man/stype.Rd
man/to.matrix.Rd
tests/all.R
tests/components/annotation.R
tests/components/impute.R
tests/components/merge.R
tests/components/pool.replicate.R
tests/components/read.expr.R
tests/components/study.R
tests/components/test_helper.R
tests/data/data.R
tests/data/dataset.annotated.csv
tests/data/study.csv
tests/data/study.edata.csv
tests/data/study.pdata.csv
tests/data/study.pdata.missing.csv
