Annotate-Study-method: Title Annotate Study

In metaOmics/preproc: Preprocessing of Normalized Gene Expression Data

Description

Title Annotate Study

Usage

## S4 method for signature 'Study'
Annotate(dataset, id.type = ID.TYPE.geneSymbol,
  platform = "", species = "", annotation.file = NA)

Arguments

dataset	Study. A Study object.
id.type	a character string to specify the type of gene ID. It should be "ProbeID", "GeneSymbol", "RefSeqID", or "EntrezID".
platform	a character string to specify the platform of the gene expression data set. See details.
species	a character string to specify the species of the gene expression data set. The accepted species include "human", "mouse", and "rat".
annotation.file	a character string of a txt file name to upload user-specific annotation file. The default is NA. See details.

Value

An annotated Study object.

Author(s)

Schwannden Kuo

metaOmics/preproc documentation built on May 29, 2019, 4:43 a.m.