get_h5se_gm: Get HDF5-SummarizedExperiment of methylated/unmethylated...
In metamaden/recountmethylation.pipeline: Process DNAm array IDATs into database files
View source: R/snakemake_functions.R
get_h5se_gm R Documentation
Get HDF5-SummarizedExperiment of methylated/unmethylated signals,
from h5se rg data
Description
Get HDF5-SummarizedExperiment of methylated/unmethylated signals,
from h5se rg data
Usage
get_h5se_gm(
files.dpath = "recount-methylation-files",
comp.dname = "compilations"
)
Arguments
files.dpath
Path to instance files directory.
comp.dname
Name of compilations directory.
ngsm.block
Number of GSM IDs per processed data block.
Value
NULL, generates an h5se gm database directory as side effect.
metamaden/recountmethylation.pipeline documentation built on Dec. 15, 2022, 2:25 a.m.
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View source: R/snakemake_functions.R
| get_h5se_gm | R Documentation |
Get HDF5-SummarizedExperiment of methylated/unmethylated signals, from h5se rg data
Description
Get HDF5-SummarizedExperiment of methylated/unmethylated signals, from h5se rg data
Usage
get_h5se_gm( files.dpath = "recount-methylation-files", comp.dname = "compilations" )
Arguments
files.dpath |
Path to instance files directory. |
comp.dname |
Name of compilations directory. |
ngsm.block |
Number of GSM IDs per processed data block. |
Value
NULL, generates an h5se gm database directory as side effect.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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