get_idat_sizem: Get matrices of IDAT file sizes before and after performing 2...
In metamaden/recountmethylation.pipeline: Process DNAm array IDATs into database files
get_idat_sizem R Documentation
Get matrices of IDAT file sizes before and after performing 2 quality
filters.
Description
Stores matrices with IDAT file sizes before and after applying size
filters. IDAT hlink files are filtered based on absolute file
size ranges expected for the instance array platform ID. Second, a
filter is performed to remove file pairs of differing sizes. Results
matrices are saved at mdpath with "msize-all_idat_hlinks_" and
"msize-filt_idat_hlinks_" fn patterns.
Usage
get_idat_sizem(
idats.path = file.path("recount-methylation-files", "idats"),
mdpath = file.path("recount-methylation-files", "metadata")
)
Arguments
idats.path
Path to the instance directory containing IDAT hlink files.
mdpath
Path to instance directory containing the metadata.
Value
Returns a size-filtered matrix of IDAT hlink filenames.
metamaden/recountmethylation.pipeline documentation built on Dec. 15, 2022, 2:25 a.m.
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| get_idat_sizem | R Documentation |
Get matrices of IDAT file sizes before and after performing 2 quality filters.
Description
Stores matrices with IDAT file sizes before and after applying size filters. IDAT hlink files are filtered based on absolute file size ranges expected for the instance array platform ID. Second, a filter is performed to remove file pairs of differing sizes. Results matrices are saved at mdpath with "msize-all_idat_hlinks_" and "msize-filt_idat_hlinks_" fn patterns.
Usage
get_idat_sizem(
idats.path = file.path("recount-methylation-files", "idats"),
mdpath = file.path("recount-methylation-files", "metadata")
)
Arguments
idats.path |
Path to the instance directory containing IDAT hlink files. |
mdpath |
Path to instance directory containing the metadata. |
Value
Returns a size-filtered matrix of IDAT hlink filenames.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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