Files in metamaden/recountmethylation
Access and analyze public DNA methylation array data compilations
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/accessors.R
R/beadarray_metric_functions.R
R/cg_control_metrics.R
R/dnam_search_index.R
R/download_db.R
R/onload.R
README.md
bioc
bioc.pub
inst/CITATION
inst/NEWS.Rd
inst/extdata/bactrl/dfaddr_control-probes.rda
inst/extdata/bactrl/rgf-cgctrl-test_hm450k-minfidata.rda
inst/extdata/crossreactive_cpgprobes/all_crx_cgv.rda
inst/extdata/crossreactive_cpgprobes/chen_crx_cgv.rda
inst/extdata/crossreactive_cpgprobes/epic_crx_cgv.rda
inst/extdata/crossreactive_cpgprobes/hm450k_crx_cgv.rda
inst/extdata/crossreactive_cpgprobes/illumina_crx_cgv.rda
inst/extdata/crossreactive_cpgprobes/pidsley_crx_cgv.rda
inst/extdata/data_analyses/data_analyses.RData
inst/extdata/fhtest/bval_fh10.csv
inst/extdata/fhtest/tbval_test.csv
inst/extdata/glint_files/covariates_minfidata.txt
inst/extdata/glint_files/glint_epistructure_explanatory-cpgs.rda
inst/extdata/glint_files/glint_results_minfidata.epistructure.pcs.txt
inst/extdata/glint_files/glint_results_minfidata.glint.log
inst/extdata/glint_files/glint_results_tutorialdata.epistructure.pcs.txt
inst/extdata/glint_files/glint_results_tutorialdata.glint.log
inst/extdata/gsm_metadata/md_final_hm450k_0-0-1.rda
inst/extdata/h5test/remethdb-h5_rg-test_0-0-1_1590090412.h5
inst/extdata/metadata.csv
inst/extdata/pwrewas_files/dfpwr_test_pwrewas.rda
inst/extdata/pwrewas_files/lpwr-results_pwrewas-example.rda
inst/extdata/remethdb-h5se_gr-test_0-0-1_1590090412/assays.h5
inst/extdata/remethdb-h5se_gr-test_0-0-1_1590090412/se.rds
inst/extdata/scripts/data_analyses.R
inst/extdata/scripts/make-data.R
inst/extdata/scripts/make-metadata.R
inst/extdata/scripts/make_servermatrix_rda.R
inst/extdata/search_index_testfiles/bvaltest.csv
inst/extdata/search_index_testfiles/fh-bval.csv
inst/extdata/search_index_testfiles/new_fhtable.csv
inst/extdata/search_index_testfiles/new_si.pickle
inst/extdata/search_index_testfiles/new_si_dict.pickle
inst/extdata/search_index_testfiles/samplelabels.csv
inst/extdata/servermatrix_rda/servermatrix_1607018051.rda
inst/extdata/sitest/bval_100.csv
inst/extdata/sitest/bval_100_fh10.csv
inst/extdata/sitest/mdf_sitest.rda
inst/extdata/sitest/new_search_index.pickle
inst/extdata/sitest/new_search_index_dict.pickle
inst/figures/remeth_hexsticker.png
inst/python/dnam_search_index.py
man/ba.Rd
man/bactrl.Rd
man/bathresh.Rd
man/data_mdpost.Rd
man/gds_idat2rg.Rd
man/gds_idatquery.Rd
man/get_crossreactive_cpgs.Rd
man/get_fh.Rd
man/get_qcsignal.Rd
man/get_rmdl.Rd
man/get_servermatrix.Rd
man/getdb.Rd
man/getrg.Rd
man/hread.Rd
man/make_si.Rd
man/matchds_1to2.Rd
man/query_si.Rd
man/rgse.Rd
man/servermatrix.Rd
man/setup_sienv.Rd
man/smfilt.Rd
tests/test-servermatrix.R
vignettes/bibliography.bib
vignettes/cell-numeric.csl
vignettes/recountmethylation_data_analyses.Rmd
vignettes/recountmethylation_glint.Rmd
vignettes/recountmethylation_pwrewas.Rmd
vignettes/recountmethylation_search_index.Rmd
vignettes/recountmethylation_users_guide.Rmd
vignettes/sivignette_plot1.png
vignettes/sivignette_plot2.png
