servermatrix: servermatrix

In metamaden/recountmethylation: Access and analyze public DNA methylation array data compilations

servermatrix

Description

Called by get_rmdl() to get a matrix of database files and file info from the server. Verifies valid versions and timestamps in filenames, and that h5se directories contain both an assays and an se.rds file.

Usage

servermatrix(
  dn = NULL,
  sslver = FALSE,
  printmatrix = TRUE,
  url = "https://methylation.recount.bio/",
  verbose = FALSE
)

Arguments

dn	Server data returned from RCurl (default NULL).
sslver	Whether to use SSL certificate authentication for server connection (default FALSE).
printmatrix	Whether to print the data matrix to console (default TRUE).
url	Server website url (default "https://methylation.recount.bio/").
verbose	Whether to show verbose messages (default FALSE).

Value

Matrix of server files and file metadata

See Also

get_rmdl, smfilt

Examples

dn <- "remethdb-h5se_gr-test_0-0-1_1590090412 29-May-2020 07:28 -"
sm <- get_servermatrix(dn = dn)

metamaden/recountmethylation documentation built on Jan. 5, 2023, 9:56 a.m.