rgse: Form an RGChannelSet from a list containing signal data...

In metamaden/recountmethylation: Access and analyze public DNA methylation array data compilations

Form an RGChannelSet from a list containing signal data matrices

Description

Forms an RGChannelSet from signal data list. This is called by certain queries to h5 files.

Usage

rgse(ldat, verbose = FALSE)

Arguments

ldat	List of raw signal data query results. Must include 2 data.frame objects named "redsignal" and "greensignal."
verbose	Whether to post status messages.

Value

Returns a RGChannelSet object from raw signal dataset queries.

See Also

getrg(), RGChannelSet()

Examples

path <- system.file("extdata", "h5test", package = "recountmethylation")
fn <- list.files(path)
dbpath <- file.path(path, fn)
rg <- getrg(dbn = dbpath, all.gsm = TRUE, metadata = FALSE)
dim(rg) # [1] 11162     2
class(rg)
# [1] "RGChannelSet"
# attr(,"package")
# [1] "minfi"

metamaden/recountmethylation documentation built on Jan. 5, 2023, 9:56 a.m.