Man pages for metrumresearchgroup/mrgvalidatetestreference
Test reference for mrgvalidate
| add_bbi_args | Add new babylon args to model |
| add_config | Joins config log tibble onto a matching run log tibble |
| apply_indices | Add parameter indices to a label tibble |
| as_model | Convert object to 'bbi_.model_type_model' |
| bbi_current_release | current release |
| bbi_dry_run | Babylon dry_run |
| bbi_exec | Executes a babylon call ('bbi ...') with... |
| bbi_help | Executes ('bbi -help') with bbi_exec and prints the output... |
| bbi_init | Executes ('bbi init') with bbi_exec() in specified directory |
| bbi_version | bbi version |
| build_bbi_param_list | Builds list of unique parameter sets for multiple model bbi... |
| build_matrix_indices | Builds matrix indices labels |
| build_path_from_mod_obj | Builds the absolute path to a file in the output directory... |
| check_bbi_exe | Checks that a bbi binary is present at the path passed to... |
| check_file | Reads the head and tail of specified file and prints it the... |
| check_lst_file | Helper function to look for .lst function in a directory |
| check_nonmem_args | Checks that all passed NONMEM command line args are valid and... |
| check_nonmem_table_output | Checks nonmem output file that's a whitespace-delimited file... |
| check_output_dir | List files in the output directory to glance at where the... |
| check_status_code | Checks status code from processx process |
| clean_ctl | Parse control stream to a named list of the blocks |
| combine_directory_path | Build absolute path from a directory and path |
| combine_list_objects | Combines two named lists. By default, shared keys are... |
| config_log | Parses model config.json outputs into a log tibble |
| copy_control_stream | Copy a NONMEM control stream file |
| copy_model_from | Generic S3 method from iterating on models. |
| create_object | Creates S3 object of class 'bbi_.model_type_model' from list... |
| enforce_length | Helper to enforce length of a list element |
| find_config_file_path | Private helper to search for babylon.yaml config files |
| find_model_file_path | helper to find valid model file and return ctl_ext(.path) by... |
| find_yaml_file_path | helper to find valid yaml file |
| format_cmd_args | Formats command line args from a named list to a string as it... |
| get_based_on | Get based_on from bbi object |
| get_model_id | Helper to strip path and extension from model file to get... |
| get_path_from_object | Get path from bbi object |
| is_diag | Check if diagonal index or not |
| model_summary | S3 generic for getting model summary |
| modify_model_field | Modify field in model object |
| new_ext | helpers that strip extension then add a diffent type |
| new_model | Create new model object by specifying relevant information as... |
| param_estimates | S3 generic for parsing parameter estimate table |
| param_labels | Extract parameter labels for report tables, etc. |
| parse_args_list | Combines NONMEM args that were passed into the function call... |
| parse_param_comment | extract labels from comments in raw ctl string |
| pipe | Pipe operator |
| plot_nonmem_table_df | Creates a line plot of the wide-format tibble output from... |
| print_nonmem_args | Prints all valid arguments to pass in... |
| rbabylon | RBabylon |
| read_model | Creates a model object from a YAML model file |
| reconcile_yaml | Reconcile model object with YAML file |
| replace_bbi_args | Replaces babylon args to model |
| run_log | Parses model yaml and outputs into a tibble that serves as a... |
| run_log_entry | Create a run log row from a 'bbi_.model_type_model' object |
| safe_based_on | Checks for yaml files relative to a starting location |
| safe_read_model | Read in model YAML with error handling |
| save_model_yaml | Saves a model model object to a yaml file |
| set_model_directory | Set global model directory option |
| stop_get_fail_msg | Build error message and throw error for generic failure fo... |
| stop_get_scaler_msg | Build error message and throw error for passing character... |
| submit_model | S3 generic method for submit_model |
| submit_models | S3 generic method for submit_models |
| suppressSpecificWarning | Suppress a warning that matches '.regexpr' |
| use_bbi | Installing bbi |
