submit_model: S3 generic method for submit_model
In metrumresearchgroup/mrgvalidatetestreference: Test reference for mrgvalidate

S3 generic method for submit_model

S3 dispatch for submit_model from bbi_nonmem_model

S3 dispatch for submit_model from character scaler. Should be path to yaml (with or without .yaml extension), or a valid model file (control stream, etc.).

S3 dispatch for submit_model from numeric input This will only work if you are calling from the same directory as the models, or if you have set the model directory with 'set_model_directory()'

Submit a NONMEM model via babylon

submit_model(
  .mod,
  .bbi_args = NULL,
  .mode = c("sge", "local"),
  ...,
  .config_path = file.path(get_model_directory() %||% ".", "babylon.yaml"),
  .wait = TRUE,
  .dry_run = FALSE,
  .directory = NULL
)

## S3 method for class 'bbi_nonmem_model'
submit_model(
  .mod,
  .bbi_args = NULL,
  .mode = c("sge", "local"),
  ...,
  .config_path = file.path(get_model_directory() %||% ".", "babylon.yaml"),
  .wait = TRUE,
  .dry_run = FALSE,
  .directory = NULL
)

## S3 method for class 'character'
submit_model(
  .mod,
  .bbi_args = NULL,
  .mode = c("sge", "local"),
  ...,
  .config_path = file.path(get_model_directory() %||% ".", "babylon.yaml"),
  .wait = TRUE,
  .dry_run = FALSE,
  .directory = get_model_directory()
)

## S3 method for class 'numeric'
submit_model(
  .mod,
  .bbi_args = NULL,
  .mode = c("sge", "local"),
  ...,
  .config_path = file.path(get_model_directory() %||% ".", "babylon.yaml"),
  .wait = TRUE,
  .dry_run = FALSE,
  .directory = get_model_directory()
)

submit_nonmem_model(
  .mod,
  .bbi_args = NULL,
  .mode = c("sge", "local"),
  ...,
  .config_path = file.path(get_model_directory() %||% ".", "babylon.yaml"),
  .wait = TRUE,
  .dry_run = FALSE
)

`.mod`	An S3 object of class 'bbi_nonmem_model', for example from 'new_model()', 'read_model()' or 'copy_model_from()'
`.bbi_args`	A named list specifying arguments to pass to babylon formatted like 'list("nm_version" = "nm74gf_nmfe", "json" = T, "threads" = 4)'. Run 'print_nonmem_args()' to see valid arguments.
`.mode`	Either "local" for local execution or "sge" to submit model(s) to the grid
`...`	args passed through to 'bbi_exec()'
`.config_path`	Optionally specify a path to a babylon.yml config. If not specified, the config in the model directory will be used by default. Path MUST be either an absolute path or relative to the model directory.
`.wait`	Boolean for whether to wait for the bbi process to return before this function call returns.
`.dry_run`	Returns an object detailing the command that would be run, insted of running it. This is primarily for testing but also a debugging tool.
`.directory`	Model directory containing the files referenced by ‘.mod'. Defaults to 'options(’rbabylon.model_directory')', which can be set globally with 'set_model_directory()'.