Description Usage Arguments Details See Also Examples
This function requires git
to be installed on your system in order to
be used.
1 2 3 4 5 6 7 | install_bioc(repo, mirror = getOption("BioC_git",
download_url("git.bioconductor.org/packages")), git = c("auto",
"git2r", "external"), dependencies = NA, upgrade = c("default",
"ask", "always", "never"), force = FALSE, quiet = FALSE,
build = TRUE, build_opts = c("--no-resave-data", "--no-manual",
"--no-build-vignettes"), repos = getOption("repos"),
type = getOption("pkgType"), ...)
|
repo |
Repository address in the format
|
mirror |
The bioconductor git mirror to use |
git |
Whether to use the |
dependencies |
Which dependencies do you want to check? Can be a character vector (selecting from "Depends", "Imports", "LinkingTo", "Suggests", or "Enhances"), or a logical vector.
|
upgrade |
One of "default", "ask", "always", or "never". "default"
respects the value of the |
force |
Force installation, even if the remote state has not changed since the previous install. |
quiet |
If |
build |
If |
build_opts |
Options to pass to |
repos |
A character vector giving repositories to use. |
type |
Type of package to |
... |
Other arguments passed on to |
It is vectorised so you can install multiple packages with a single command.
'
Other package installation: install_bitbucket
,
install_cran
, install_dev
,
install_github
,
install_gitlab
, install_git
,
install_local
, install_svn
,
install_url
, install_version
1 2 3 4 5 6 7 8 9 10 | ## Not run:
install_bioc("SummarizedExperiment")
install_bioc("release/SummarizedExperiment")
install_bioc("3.3/SummarizedExperiment")
install_bioc("SummarizedExperiment#abc123")
install_bioc("user:password@release/SummarizedExperiment")
install_bioc("user:password@devel/SummarizedExperiment")
install_bioc("user:password@SummarizedExperiment#abc123")
## End(Not run)
|
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