alldyn: Synthetic data of dynamic organellar map, from Borner and al....
In mgerault/pRolocExtra: New functions to pRoloc package
alldyn R Documentation
Synthetic data of dynamic organellar map, from Borner and al. 2016
Description
A large MSnSet containing the data from Borner and al. 2016.
It contains 2235 proteins, with five fractions, three replicates for two conditions.
The data were normalized (see Borner and al. 2016 for more details)
The best way to access its content is to use the functions :
fData and exprs,
For alldyn : exprs show a tab of 5 columns (the five fractions) and 2235*6 rows (three replicates times two conditions).
For alldyn_two : exprs show a tab of 15 columns (3 replicates times five fractions) and 2235*2 rows (two conditions).
For alldyn_mean : exprs show a tab of 5 columns (the three replicates were averaged) and 2235*2 rows (two conditions).
fData always show a tab of 4 columns containing the gene name, the markers of each protein
(their cellular location), a columns named protcond_name to differentiate proteins between the replicates and the conditions
and a column named cond to differentiate replicates and the conditions.
Here pData isn't useful
Usage
alldyn
alldyn_two
alldyn_mean
Format
A large MSnSet
mgerault/pRolocExtra documentation built on Sept. 15, 2022, 9:26 a.m.
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| alldyn | R Documentation |
Synthetic data of dynamic organellar map, from Borner and al. 2016
Description
A large MSnSet containing the data from Borner and al. 2016.
It contains 2235 proteins, with five fractions, three replicates for two conditions.
The data were normalized (see Borner and al. 2016 for more details)
The best way to access its content is to use the functions :
fData and exprs,
For alldyn : exprs show a tab of 5 columns (the five fractions) and 2235*6 rows (three replicates times two conditions).
For alldyn_two : exprs show a tab of 15 columns (3 replicates times five fractions) and 2235*2 rows (two conditions).
For alldyn_mean : exprs show a tab of 5 columns (the three replicates were averaged) and 2235*2 rows (two conditions).
fData always show a tab of 4 columns containing the gene name, the markers of each protein
(their cellular location), a columns named protcond_name to differentiate proteins between the replicates and the conditions
and a column named cond to differentiate replicates and the conditions.
Here pData isn't useful
Usage
alldyn alldyn_two alldyn_mean
Format
A large MSnSet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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