getPwmFromFastaFile: generates a pwm from a FASTA file
In mgledi/DiffLogo: DiffLogo: A comparative visualisation of biooligomer motifs
Description
Usage
Arguments
Value
Examples
Description
generates a pwm from a FASTA file
Usage
1
getPwmFromFastaFile(filename, alphabet = NULL)
Arguments
filename
the FASTA file
alphabet
the desired alphabet of type Alphabet
Value
a pwm
Examples
1
2
3
fileName = "extdata/alignments/F-box_bacteria.seq.fa"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFastaFile(file)
mgledi/DiffLogo documentation built on June 7, 2020, 8:23 a.m.
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Description Usage Arguments Value Examples
Description
generates a pwm from a FASTA file
Usage
1 | getPwmFromFastaFile(filename, alphabet = NULL)
|
Arguments
filename |
the FASTA file |
alphabet |
the desired alphabet of type Alphabet |
Value
a pwm
Examples
1 2 3 | fileName = "extdata/alignments/F-box_bacteria.seq.fa"
file = system.file(fileName, package = "DiffLogo")
pwm = getPwmFromFastaFile(file)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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