plot.rd_mar: plot.rd_mar

In mhesselbarth/SHAR: Species-Habitat Associations

plot.rd_mar

Description

Plot method for rd_pat object

Usage

## S3 method for class 'rd_mar'
plot(
  x,
  what = "sf",
  n = NULL,
  probs = c(0.025, 0.975),
  ask = TRUE,
  verbose = TRUE,
  ...
)

Arguments

x	rd_mar object with randomized patterns.
what	Character specifying to plot summary functions of point patterns (what = "sf") or actual patterns (what = "pp").
n	Integer with number or vector of ids of randomized pattern to plot. See Details section for more information.
probs	Vector with quantiles of randomized data used for envelope construction.
ask	Logical if the user is asked to press <RETURN> before second summary function is plotted (only used if what = "sf").
verbose	Logical if progress report is printed.
...	Not used.

Details

The function plots the pair correlation function and the nearest neighbour function of the observed pattern and the reconstructed patterns (as "simulation envelopes").

It is also possible to plot n randomized patterns and the observed pattern using what = "pp". If n is a single number, n randomized patterns will be sampled to plot. If n is a vector, the corresponding patterns will be plotted.

Value

void

See Also

reconstruct_pattern, fit_point_process

Examples

## Not run: 
pattern_recon <- reconstruct_pattern(species_a, n_random = 1, max_runs = 1000,
simplify = TRUE, return_input = FALSE)
marks_sub <- spatstat.geom::subset.ppp(species_a, select = dbh)
marks_recon <- reconstruct_pattern_marks(pattern_recon, marks_sub,
n_random = 19, max_runs = 1000)
plot(marks_recon)

## End(Not run)

mhesselbarth/SHAR documentation built on Feb. 16, 2025, 5:35 a.m.