scTHI_plotResult: scTHI_plotResult

In miccec/scTHI: Indentification of significantly activated ligand-receptor interactions across clusters of cells from single-cell RNA sequencing data

scTHI_plotResult

Description

Creates barplots of scTHI_score results.

Usage

scTHI_plotResult(scTHIresult, cexNames = 0.8, plotType = c("score",
  "pair"), nRes = NULL)

Arguments

scTHIresult	scTHI object.
cexNames	Size of names in barplot.
plotType	Type of plot to be generated. Default is "score", can be also "pair". The "score" option will generate a barplot for each resulted interaction pair, representing the calculated interaction score and the related p-Value.The "pair" option will generate two barplot for each resulted interaction pair, representing the percentage of cells of each cluster expressing partnerA and partnerB gene, respectively.
nRes	Number of pairs to plot (all if NULL).

Value

None

Examples

library(scTHI.data)
data(scExample)
result <-  scTHI_score(scExample,
                       cellCusterA = colnames(scExample)[1:30],
                       cellCusterB = colnames(scExample)[31:100],
                       cellCusterAName = "ClusterA",
                       cellCusterBName = "ClusterB", filterCutoff = 0,
                       pvalueCutoff = 1, nPermu = 100, ncore = 8)

scTHI_plotResult(result, plotType = "score")
scTHI_plotResult(result, plotType = "pair")

miccec/scTHI documentation built on April 21, 2023, 12:40 p.m.