bp2.find.followers: Construct follower lists for bp2.model objects
In microbiome/biopax2: BioPAX level 2 S4 object model

Description Usage Arguments Value Author(s) See Also Examples

List slot values of bp2 model objects. Returns value is a follower list for objs that can be processed further with different graph packages

1	bp2.find.followers(objs, include.slots=NA, exclude.slots=NA)

`objs`	List of bp2 model objects or vector of model object ids in the active model.
`include.slots`	If value other than NA is specified get only valued of names slots. Otherwise use all slots.
`exclude.slots`	Don't read the values of these slots.

Returns list that contains one entry for each object id provided as an argument. Each list entry is a vector of integers that are IDs of other objects that are connected to the object.

Ossi Koivistoinen

bp2.minimum.spanning.tree, bp2.create.model

# Create follower list for all objects using all possible connections
my.bp2 <- bp2.create.model(...)
follower.list <- bp2.find.followers(my.bp2@all.objects) 

# See how many different control types there are
controls <- bp2.get.instances.of(my.bp2@all.objects, "bp2.control")
control.types <- bp2.find.followers(controls, include.slots=''controlType'')
table(control.types)