deprecate: These functions will be deprecated. Please use other...

In microbiome/mia: Microbiome analysis

These functions will be deprecated. Please use other functions instead.

Description

These functions will be deprecated. Please use other functions instead.

Usage

cluster(x, ...)

## S4 method for signature 'SummarizedExperiment'
cluster(x, ...)

addTaxonomyTree(x, ...)

## S4 method for signature 'SummarizedExperiment'
addTaxonomyTree(x, ...)

taxonomyTree(x, ...)

## S4 method for signature 'SummarizedExperiment'
taxonomyTree(x, ...)

mergeFeaturesByPrevalence(x, ...)

## S4 method for signature 'SummarizedExperiment'
mergeFeaturesByPrevalence(x, ...)

loadFromBiom(...)

loadFromQIIME2(...)

readQZA(...)

loadFromMothur(...)

loadFromMetaphlan(...)

loadFromHumann(...)

full_join(x, ...)

## S4 method for signature 'ANY'
full_join(x, ...)

inner_join(x, ...)

## S4 method for signature 'ANY'
inner_join(x, ...)

left_join(x, ...)

## S4 method for signature 'ANY'
left_join(x, ...)

right_join(x, ...)

## S4 method for signature 'ANY'
right_join(x, ...)

plotNMDS(x, ...)

estimateDivergence(x, ...)

## S4 method for signature 'SummarizedExperiment'
estimateDivergence(x, ...)

Arguments

x	A SummarizedExperiment object.
...	Additional parameters. See dedicated function.

microbiome/mia documentation built on April 27, 2024, 4:04 a.m.