esophagus: esophagus
In microbiome/mia: Microbiome analysis
esophagus R Documentation
esophagus
Description
This small dataset from a human esophageal community includes 3 samples from
3 human adults based on biopsies analysed with 16S rDNA PCR. The 16S rRNA
sequence processing is provided in the mothur wiki from the link below. It was
converted into a TreeSummarizedExperiment from the phyloseq package.
Usage
data(esophagus)
Format
A TreeSummarizedExperiment with 58 features and 3 samples. The
rowData contains no taxonomic information. The colData is empty.
Author(s)
Pei et al. zhiheng.pei@med.nyu.edu.
Source
http://www.mothur.org/wiki/Esophageal_community_analysis
References
Pei, Z., Bini, E. J., Yang, L., Zhou, M., Francois, F., & Blaser, M. J. (2004).
Bacterial biota in the human distal esophagus.
Proceedings of the National Academy of Sciences of the United States of America, 101(12), 4250-4255.
https://doi.org/10.1073/pnas.0306398101
McMurdie, J. & Holmes, S. (2013) phyloseq: An R Package for reproducible interactive analysis
and graphics of microbiome census data. PLoS ONE. 8(4):e61217.
https://doi.org/10.1371/journal.pone.0061217
See Also
mia-datasets
microbiome/mia documentation built on April 27, 2024, 4:04 a.m.
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| esophagus | R Documentation |
esophagus
Description
This small dataset from a human esophageal community includes 3 samples from 3 human adults based on biopsies analysed with 16S rDNA PCR. The 16S rRNA sequence processing is provided in the mothur wiki from the link below. It was converted into a TreeSummarizedExperiment from the phyloseq package.
Usage
data(esophagus)
Format
A TreeSummarizedExperiment with 58 features and 3 samples. The rowData contains no taxonomic information. The colData is empty.
Author(s)
Pei et al. zhiheng.pei@med.nyu.edu.
Source
http://www.mothur.org/wiki/Esophageal_community_analysis
References
Pei, Z., Bini, E. J., Yang, L., Zhou, M., Francois, F., & Blaser, M. J. (2004). Bacterial biota in the human distal esophagus. Proceedings of the National Academy of Sciences of the United States of America, 101(12), 4250-4255. https://doi.org/10.1073/pnas.0306398101
McMurdie, J. & Holmes, S. (2013) phyloseq: An R Package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE. 8(4):e61217. https://doi.org/10.1371/journal.pone.0061217
See Also
mia-datasets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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