API for microbiome/miaTime
Microbiome Time Series Analysis
| Global functions | |
|---|---|
| .add_reference_for_stability | Source code |
| .add_reference_samples_to_coldata | Source code |
| .calculate_bimodality | Source code |
| .calculate_bimodality_coefficient | Source code |
| .calculate_growth_metrics | Source code |
| .calculate_kurtosis | Source code |
| .calculate_skewness | Source code |
| .calculate_stability_metrics | Source code |
| .check_input | Source code |
| .convert_divergence_to_df | Source code |
| .create_msg_from_list | Source code |
| .custom_reference_for_stability | Source code |
| .default_reference_for_stability | Source code |
| .get_baseline_samples | Source code |
| .get_previous_samples | Source code |
| .get_reference_samples | Source code |
| .get_time_difference | Source code |
| .summarize_duplicates | Source code |
| SilvermanAGutData | Man page |
| addBaselineDivergence | Man page |
| addBaselineDivergence,SummarizedExperiment-method | Man page |
| addBimodality | Man page |
| addBimodality,SummarizedExperiment-method | Man page |
| addShortTermChange | Man page |
| addShortTermChange,SummarizedExperiment-method | Man page |
| addStability | Man page |
| addStability,SummarizedExperiment-method | Man page |
| addStepwiseDivergence | Man page |
| addStepwiseDivergence,SummarizedExperiment-method | Man page |
| getBaselineDivergence | Man page |
| getBaselineDivergence,SummarizedExperiment-method | Man page |
| getBimodality | Man page |
| getBimodality,SummarizedExperiment-method | Man page |
| getShortTermChange | Man page |
| getShortTermChange,SummarizedExperiment-method | Man page |
| getStability | Man page |
| getStability,SummarizedExperiment-method | Man page |
| getStepwiseDivergence | Man page |
| getStepwiseDivergence,ANY-method | Man page |
| hitchip1006 | Man page |
| miaTime | Man page |
| miaTime-package | Man page |
| minimalgut | Man page |
| temporalMicrobiome20 | Man page |
