hitchip1006: HITChip Atlas with 1006 Western Adults

In microbiome/miaTime: Microbiome Time Series Analysis

HITChip Atlas with 1006 Western Adults

Description

This data set contains genus-level microbiota profiling with HITChip for 1006 western adults with no reported health complications, reported in Lahti et al. (2014).

Usage

data(hitchip1006)

Format

The data set in TreeSummarizedExperiment format.

Details

The data is also available for download from the Data Dryad http://doi.org/10.5061/dryad.pk75d and was initially released as a phyloseq object under the name atlas1006 in microbiome R package. The miaTime package provides this as TreeSummarizedExperiment object. Some of the subjects also have short time series.

Value

Loads the data set in R.

Author(s)

Leo Lahti

References

Lahti et al. Tipping elements of the human intestinal ecosystem. Nature Communications 5:4344, 2014. https://doi.org/10.1038/ncomms5344.

microbiome/miaTime documentation built on May 7, 2023, 2:06 p.m.