temporalMicrobiome20: Gut Microbiome Profiling 20 Belgian Women

temporalMicrobiome20R Documentation

Gut Microbiome Profiling 20 Belgian Women

Description

This time-series data set contains absolute temporal variation for most major gut genera, as well as diversity indicators for both relative and quantitative abundance profiles of healthy women living in an industrialized country.

Usage

data(temporalMicrobiome20)

Format

The data set in TreeSummarizedExperiment format.

Details

The data is available also on https://www.nature.com/articles/s41467-021-27098-7#Sec43 The data contains 713 fecal samples from 20 Belgian women collected over six weeks. The current implementation in miaTime provides this as TreeSummarizedExperiment object.

Value

Loads the data set in R.

Author(s)

Doris Vandeputte

References

Vandeputte, D., De Commer, L., Tito, R.Y. et al. Temporal variability in quantitative human gut microbiome profiles and implications for clinical research. Nat Commun 12, 6740 (2021). https://doi.org/10.1038/s41467-021-27098-7


microbiome/miaTime documentation built on Oct. 3, 2024, 5:04 a.m.