R/plotNDMS.R

In microbiome/miaViz: Microbiome Analysis Plotting and Visualization

#' Wrapper for scater::plotReducedDim()
#' 
#' @param x a
#'   \code{\link[SummarizedExperiment:SummarizedExperiment-class]{SummarizedExperiment}}
#'   object.
#'   
#' @param ncomponents 	
#'   A numeric scalar indicating the number of dimensions to plot, starting from 
#'   the first dimension. Alternatively, a numeric vector specifying the 
#'   dimensions to be plotted. (Default: 2)
#'   
#' @param ... additional arguments passed to scater::plotReducedDim().
#'   
#' @name plotNMDS
NULL

#' @rdname plotNMDS
#' @export
plotNMDS <- function(x, ..., ncomponents = 2){
    plotReducedDim(x, ncomponents = ncomponents, dimred = "NMDS", ...)
}