moving_pictures: moving_pictures
In microsud/jeevanuDB: jeevanuDB: Example data sets for microbiome R pkg
Description
Usage
Format
Value
Author(s)
Source
References
Description
The moving_pictures data set contains high-through taxonomic profiling data from
1966 samples from two F4 (saliva n= 135, skin n= 268, stool n= 131) and M3 (saliva n= 373, skin n= 723, stool n= 336)
subjects which is a subet from the Earth Microbiome Project and samples from
the moving pictures study by . The ASV-level counts as would be expected for denoising algorithms.
NOTE: These are only test datasets.
Usage
1
Format
phyloseq object
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
Source
https://www.nature.com/articles/nature24621
References
Thompson, Luke R., et al. "A communal catalogue reveals Earth’s multiscale microbial diversity." Nature 551, no. 7681 (2017): 457-463.
Caporaso, J. Gregory, et al. "Moving pictures of the human microbiome." Genome biology 12, no. 5 (2011): R50.
To cite the package, see citation('jeevanuDB')
microsud/jeevanuDB documentation built on June 13, 2020, 12:24 a.m.
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Description Usage Format Value Author(s) Source References
Description
The moving_pictures data set contains high-through taxonomic profiling data from 1966 samples from two F4 (saliva n= 135, skin n= 268, stool n= 131) and M3 (saliva n= 373, skin n= 723, stool n= 336) subjects which is a subet from the Earth Microbiome Project and samples from the moving pictures study by . The ASV-level counts as would be expected for denoising algorithms. NOTE: These are only test datasets.
Usage
1 |
Format
phyloseq object
Value
Loads the data set in R.
Author(s)
Sudarshan Shetty sudarshanshetty9@gmail.com
Source
https://www.nature.com/articles/nature24621
References
Thompson, Luke R., et al. "A communal catalogue reveals Earth’s multiscale microbial diversity." Nature 551, no. 7681 (2017): 457-463.
Caporaso, J. Gregory, et al. "Moving pictures of the human microbiome." Genome biology 12, no. 5 (2011): R50.
To cite the package, see citation('jeevanuDB')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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