mikelove/rnaseqDTU: RNA-seq workflow for differential transcript usage following Salmon quantification
RNA-seq workflow for differential transcript usage (DTU) following Salmon quantification. This workflow uses Bioconductor packages tximport, DRIMSeq, and DEXSeq to perform a DTU analysis on simulated data. It also shows how to use stageR to perform two-stage testing of DTU, a statistical framework to screen at the gene level and then confirm which transcripts within the significant genes show evidence of DTU.
Getting started
Browse package contents
Package details |
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| Bioconductor views | GeneExpressionWorkflow ImmunoOncologyWorkflow Workflow |
| Maintainer | |
| License | Artistic-2.0 |
| Version | 1.17.0 |
| URL | https://github.com/mikelove/rnaseqDTU/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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